Sunday, May 19, 2013

Health

USN Current Issue

Biological agents

By U.S. Department of Health and Human Services
Posted 3/29/06

Overview

The threat from biological agents arises when naturally occurring microbes are weaponized—harnessed and modified to cause disease or even kill many people. Organisms can be used in their naturally occurring state, or they may be able to be modified to increase virulence and/or render the disease they cause resistant to treatment.

To determine if an outbreak may be bioterrorism, scientists will look for the following characteristics:

Although some of these characteristics may be true of a naturally occurring outbreak, they will generally signal that the outbreak needs to be closely scrutinized.

Understanding biological agents

The first step in understanding biological agents and how they affect the human body is a review of associated terminology.

Infectious Diseases

Contagious Diseases

Toxins

Bacteria and Viruses

Both bacteria and viruses can cause infectious diseases.

Bacteria:

Viruses:

Delivery of biological agents

The ability to successfully deliver a biological attack depends on:

Routes of Entry

Biological agents can enter the body through:

Delivery Methods

Biological weapons can be prepared for delivery as a weapon in wet or dry form:

Biological weapons can be delivered by:

Effectiveness of Release

The effectiveness of a biological release depends on:

Testing for biological agents

Quick diagnosis and treatment of a patient exposed to a biological agent are key to saving that patient's life. A biological attack may go unnoticed until large groups of people begin exhibiting symptoms, which makes prompt diagnosis even more critical. But getting a quick medical answer is complicated by the fact that currently there is no single test that can diagnose whether a person has been exposed to biological agents. There are clinical trials underway, however, on better testing methods.

To look for evidence of biological agents, physicians will take blood or other samples to be tested at clinical laboratories. As the clock is ticking, the sample must be collected and sent to the appropriate lab for analysis. However, it takes time to isolate the bacteria, toxin, or virus from the sample. This time frame can stretch from hours to days, depending on the agent, the amount of exposure, the proximity and capabilities of the lab, and the time the test(s) take. The following list provides descriptions of the types of tests that may be run:

Environmental testing is examining a building or an area for the presence of a biological or chemical agent. Testing is usually a two-step process. Using anthrax as an example, if the sample contains a large amount of the bacteria (Bacillus anthracis), a positive reading may come back within minutes. However, this quick initial result from the scene may be what is called a false positive result, so a more reliable test must be done by a more sophisticated laboratory to confirm the results. The confirmation test can take up to 72 hours depending on how fast the bacteria grow and can be positively identified.

A nasal swab is an environmental test that may be used to assist in a public-health investigation to determine the presence of a bioterrorism agent in an area or building. Nasal swabs are not used to determine if a person is infected by a given agent.

A culture is a method for growing an organism in the lab (for example, in a petri dish). A culture can help in identifying a bacteria or virus. Cultures are the most readily available technology for clinical diagnosis of a suspected case of bioterrorism but can be time consuming to complete.

A blood culture is a test that looks for bacteria or viruses in the blood. Blood is drawn from a patient, and the sample is sent to a special laboratory for analysis. The sample is incubated, or kept in a warm place, at a certain temperature, and in this controlled environment, the bacteria grow and are isolated from the blood for easier identification.

"Media" are the nutrient mixes used to grow organisms in a lab. Selective media are used to identify an organism by giving it or depriving it of certain nutrients. For example, selective agents can be added or removed, which "poison" some organisms while allowing others to grow.

Gram staining uses dyes to make a bacterial cell stand out for identification. A specimen is put on a slide, and a four-part staining procedure begins. This test may produce results in less than an hour, but it is not specific enough to definitely identify the organism, and a longer confirmation test is still needed.

Obtaining sputum involves getting a sample of a patient's phlegm by having him or her cough it up. Sputum samples are usually ordered when a patient is exhibiting pneumonialike symptoms that could be an indicator of an inhalational form of anthrax, plague, or tularemia. The sample is then stained and viewed under a microscope to look for the presence of certain bacteria. Part of the same sample is also used for a culture.

There are also more sophisticated tests that are used to identify agents, such as:

Immunoassays, which look for specific antigens or antibodies and are useful in detecting the presence of toxins. However, antibody production for identification can take time.

Gene amplification assays, such as a polymerase chain reaction, which look at the DNA or RNA to identify an agent. However, sample preparation can take a long time.

In general, detection and identification using any of these methods is dependent on the sample quantity and quality and the exactness of the processing. A combination of tests will yield the most accurate results. In the absence of immediate results, physicians who suspect bioterrorism may begin a preliminary course of treatment until the lab results are in.

How long testing should take

Unfortunately, there is no single answer to the question of how long testing will take. The testing of biological agents is complicated by several factors, which can affect the time that passes before the presence of an agent can be confirmed or a diagnosis can be made. These factors include:

Identifying the agent.Although bioterrorism is now a household term, actual incidents of bioterrorism have been rare, leaving today's physicians with limited experience in identifying these agents in the lab or treating affected patients. This means that the first patients who become sick may be mistaken for having other illnesses, thus causing a delay in the effort to test for biological agents.

Presumptive vs. confirmatory diagnoses. Not all tests are conclusive. Some tests, such as Gram stains, can give a presumptive diagnosis that an agent is present, but follow-up tests are needed. In general, presumptive diagnosis of an agent can usually be made in about a day. Confirmatory diagnosis can take two to three days.

Viral, bacterial, or toxin load. The "load" refers to how much of the agent is present in a patient. If relatively large amounts of an agent are present in a patient, cultures designed to grow the bacteria or virus could take as little as a few hours. If smaller amounts of the agent are present in a patient, these same culture tests could take up to two or three days.

Lab capabilities. Can the needed tests be done in local labs, near a suspected attack, or do the samples need to be shipped out to more advanced labs, thus affecting the overall timeline? Shipping samples to more advanced labs can tack on an extra day or two to the wait time. CDC's Laboratory Response Network helps facilitate this process.

The kind of test that is used. Numerous tests are employed to detect the presence of bioterrorism agents. Blood cultures can take up to three days in some cases, for example, but Gram stains can be ready within an hour. However, some of these quicker tests will only give preliminary information, which must be confirmed with more comprehensive tests.

What we don't know about biological weapons of mass destruction

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